Wang, Z, Treder K, Miller WA (2009) Structure of a viral cap-independent translation element that functions via high affinity binding to the eIF4E subunitof eIF4F. J Biol Chem 284, 14189–14202. DOI 10.1074/jbc.M808841200 Chung BY-W, Miller WA, Atkins JF, Firth AE (2008) An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA 105, 5897-5902.Salem NM, Miller WA, Rowhani A, Golino DA, Moyne A-L, Falk BW (2008) Rose spring dwarf-associated virus has RNA structural and gene-expression features like those of Barley yellow dwarf virus. Virology 374, 354-360. Treder K, Pettit Kneller E, Allen EM, Wang Z, Browning KS, Miller WA, (2008) The 3’ cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation. RNA 14, 134-147. Miller WA, Treder K, Wang Z (2007) The amazing diversity of cap-independent translation elements in the 3_-untranslated regions of plant viral RNAs Biochemical Society Transactions 36, 1629-1633.Shen R, Miller WA (2007) Structures required for poly(A) tail-independent translation overlap with, but are distinct from, cap-independent translation and RNA replication signals at the 3' end of Tobacco necrosis virus RNA. Virology 358, 448-458. Rakotondrafara AM, Polacek C, Harris E, Miller WA (2006) Oscillating kissing stem-loop interactions mediate 5' scanning-dependent translation by a viral 3' cap-independent translation element. RNA 12, 1893-1906. Shen R, Rakotondrafara AM, Miller WA (2006) trans regulation of cap-independent translation by a viral subgenomic RNA. Journal of Virology 80, 10045-10054. Miller WA, White KA (2006) Control of plant virus gene expression and replication by long-distance RNA-RNA interactions. Annual Review of Phytopathology 44, 447-467. Pettit Kneller EM, Rakotondrafara AM, Miller WA (2006) Cap-independent translation of plant viral RNAs. Virus Research 119, 63-75. Dreher TW, Miller WA (2006) Translational control of positive strand RNA plant viruses. Virology 344, 185-197. Shen R, Miller WA (2004) The 3' untranslated region of Tobacco necrosis virus RNA contains a Barley yellow dwarf virus-like cap-independent translation element. Journal of Virology 78, 4655-4664. Barry JK, Miller WA (2002) A -1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA. Proc Natl Acad Sci USA 99, 11133-11138. Guo L, Allen EM, Miller WA (2001) Base-pairing between untranslated regions facilitates translation of an uncapped, non-polyadenylated viral mRNA. Molecular Cell 7, 1103-1109 . Paul CP, Barry JK, Dinesh-Kumar SP, Brault V, Miller WA (2001) A sequence required for -1 ribosomal frameshifting located four kilobases downstream of the frameshift site. Journal of Molecular Biology 310, 987-999. Baranov PV, Gurvich OL, Fayet O, Prere MF, Miller WA, Gesteland RF, Atkins JF, Giddings MC (2001) RECODE: a database of frameshifting, bypassing and codon redefinition utilized for gene expression. Nucleic Acids Res. 29, 264-267 Guo L, Allen EM, Miller WA (2000) Structure and function of a cap-independent translation element that functions in either the 3' or the 5' untranslated region. RNA 6, 1808-1820 Wang S, Guo L, Allen E, Miller WA (1999) Selective control of cap-independent translation by an RNA sequence in cis and in trans: a new potential mechanism for regulation of viral gene expression. RNA 5, 728-738 Allen E, Wang S, Miller WA (1999) Barley yellow dwarf virus RNA requires a cap-independent translation sequence because it lacks a 5' cap. Virology 253, 139-144. Wang S, Browning KS, Miller WA (1997) A viral sequence in the 3' untranslated region mimics a 5' cap in facilitating translation of uncapped mRNA. EMBO Journal 16, 4107-4116.Miller WA, Brown CM, Wang S. (1997) New punctuation for the genetic code: Luteovirus gene expression. Seminars in Virology 8, 3-13.
Brown CM, Dinesh-Kumar SP, and Miller WA (1996). Local and distant sequences are required for efficient read-through of the barley yellow dwarf virus-PAV coat protein gene stop codon. Journal of Virology 70, 5884-5892. Wang S, Miller WA (1995) A sequence located 4.5 to 5 kilobases from the 5' end of the barley yellow dwarf virus (PAV) genome strongly stimulates translation of uncapped mRNA. J Biol Chem 270, 13446-13452 . Shen R, Miller WA (2004) Subgenomic RNA as a riboregulator: negative regulation of RNA replication by Barley yellow dwarf virus subgenomic RNA 2 . Virology 327, 196-205. Koev G, Liu S, Beckett R, Miller WA (2002) The 3'-terminal structure required for replication of barley yellow dwarf virus RNA contains an embedded 3' end. Virology 292, 114-126. Miller WA, and Koev G (2000) Synthesis of subgenomic RNAs by positive-strand RNA viruses. Virology 273, 1-8. Koev G, and Miller WA (2000) A positive-strand RNA virus with three very different subgenomic RNA promoters. J. Virol. 74, 5988-5996. Koev G, Mohan BR, Miller WA. (1999) Primary and secondary structural elements required for synthesis of barley yellow dwarf virus subgenomic RNA1. J. Virol. 73, 2876-2885. Mohan BR, Dinesh-Kumar SP, Miller WA. (1995) Genes and cis-acting sequences involved in replication of barley yellow dwarf virus-PAV RNA. Virology 212, 186-196.- GENERAL LUTEOVIROLOGY -
Miller WA, Beckett R, Liu, S (2002) Barley yellow dwarf virus: Luteoviridae or Tombusviridae? Molecular Plant Pathol 3, 177-183 293, 781-793.
Miller WA (1999) Luteovirus (Luteoviridae). In "Encyclopedia of Virology" 2nd Edition (R.G. Webster and A. Granoff, eds.) Academic Press, London. pp. 901-908.
Miller WA, Rasochova L (1997). Barley yellow dwarf viruses. Annual Review of Phytopathology 35, 167-190.
Chay CA, Gunasinge UB, Dinesh-Kumar SP, Miller WA, Gray SM (1996). Aphid transmission and systemic plant infection determinants of barley yellow dwarf luteovirus-PAV are contained in the coat protein readthrough domain and 17-kDa protein, respectively. Virology 219, 57-65.
Sivakumar S, Harrison RL, Liu S, Miller WA, Bonning BC (2009) Baculovirus-expressed virus-like particles of Pea enation mosaic virus vary in size and encapsidate baculovirus mRNAs (2009) Virus Research 139, 54–63. DOI 10.1016/j.virusres.2008.10.002
Liu S, Sivakumar S, Wang Z, Bonning BC, Miller WA (2009) The readthrough domain of pea enation mosaic virus coat protein is not essential for virus stability in the hemolymph of the pea aphid. Arch Virol 154, 469–479. DOI 10.1007/s00705-009-0327-7
Boyapalle S, Beckett RJ, Pal N, Miller WA, Bonning BC (2008) Infectious genomic RNA of Rhopalosiphum padi virus transcribed in vitro from a full-length cDNA clone. Virology 375, 401-411.
Pal N, Boyapalle S, Beckett R, Miller WA, Bonning BC (2007) A Baculovirus-expressed Dicistrovirus that is infectious to aphids J Virol 81, 9339-9345.
Boyapalle S, Pal N, Bonning BC, Miller WA (2007) A glassy-winged sharpshooter cell line supports replication of Rhopalosiphum padi virus (Dicistroviridae) J Invertebrate Pathol 94, 130-139.
Liu S, Bonning BC, Miller WA (2006) A simple wax-embedding method for isolation of hemolymph for detection of luteoviruses in the hemocoel J Virol Methods 132, 174-180.
Banerjee Ak, Chatterjee M, Yu Y, Suh SG, Miller WA, Hannapel DJ (2006) Dynamics of a mobile RNA of potato involved in a long-distance signaling pathway. Plant Cell 18, 3443-3457.
Song SI, Miller WA (2004) cis and trans requirements for rolling circle replication of a satellite RNA . Journal of Virology 78, 3072-3082.
Song SI, Silver SL, Aulik MA, Rasochova L, Mohan BR, Miller WA (1999) Satellite cereal yellow dwarf virus-RPV (satRPV) RNA requires a double hammerhead for self-cleavage and an alternative structure for replication. Journal of Molecular Biology 293, 781-793.
Rasochova L, Passmore B, Falk BW, Miller WA (1997) The satellite RNA of barley yellow dwarf virus-RPV is supported by beet western yellows virus in dicotyledonous protoplasts and plants. Virology 231, 182-191.
Rasochova L, Miller WA (1996). Satellite RNA of barley yellow dwarf-RPV virus reduces accumulation of RPV helper virus RNA and attenuates RPV symptoms in oats. Molecular Plant-Microbe Interactions 9, 646-650.
Miller WA, Beckett R, Liu, S (2002) Barley yellow dwarf virus: Luteoviridae or Tombusviridae? Molecular Plant Pathol 3, 177-183 293, 781-793.Miller WA (1999) Luteovirus (Luteoviridae). In "Encyclopedia of Virology" 2nd Edition (R.G. Webster and A. Granoff, eds.) Academic Press, London. pp. 901-908.
Miller WA, Rasochova L (1997). Barley yellow dwarf viruses. Annual Review of Phytopathology 35, 167-190. Chay CA, Gunasinge UB, Dinesh-Kumar SP, Miller WA, Gray SM (1996). Aphid transmission and systemic plant infection determinants of barley yellow dwarf luteovirus-PAV are contained in the coat protein readthrough domain and 17-kDa protein, respectively. Virology 219, 57-65.Sivakumar S, Harrison RL, Liu S, Miller WA, Bonning BC (2009) Baculovirus-expressed virus-like particles of Pea enation mosaic virus vary in size and encapsidate baculovirus mRNAs (2009) Virus Research 139, 54–63. DOI 10.1016/j.virusres.2008.10.002Liu S, Sivakumar S, Wang Z, Bonning BC, Miller WA (2009) The readthrough domain of pea enation mosaic virus coat protein is not essential for virus stability in the hemolymph of the pea aphid. Arch Virol 154, 469–479. DOI 10.1007/s00705-009-0327-7Boyapalle S, Beckett RJ, Pal N, Miller WA, Bonning BC (2008) Infectious genomic RNA of Rhopalosiphum padi virus transcribed in vitro from a full-length cDNA clone. Virology 375, 401-411. Pal N, Boyapalle S, Beckett R, Miller WA, Bonning BC (2007) A Baculovirus-expressed Dicistrovirus that is infectious to aphids J Virol 81, 9339-9345. Boyapalle S, Pal N, Bonning BC, Miller WA (2007) A glassy-winged sharpshooter cell line supports replication of Rhopalosiphum padi virus (Dicistroviridae) J Invertebrate Pathol 94, 130-139. Liu S, Bonning BC, Miller WA (2006) A simple wax-embedding method for isolation of hemolymph for detection of luteoviruses in the hemocoel J Virol Methods 132, 174-180. Banerjee Ak, Chatterjee M, Yu Y, Suh SG, Miller WA, Hannapel DJ (2006) Dynamics of a mobile RNA of potato involved in a long-distance signaling pathway. Plant Cell 18, 3443-3457. Song SI, Miller WA (2004) cis and trans requirements for rolling circle replication of a satellite RNA . Journal of Virology 78, 3072-3082. Song SI, Silver SL, Aulik MA, Rasochova L, Mohan BR, Miller WA (1999) Satellite cereal yellow dwarf virus-RPV (satRPV) RNA requires a double hammerhead for self-cleavage and an alternative structure for replication. Journal of Molecular Biology 293, 781-793. Rasochova L, Passmore B, Falk BW, Miller WA (1997) The satellite RNA of barley yellow dwarf virus-RPV is supported by beet western yellows virus in dicotyledonous protoplasts and plants. Virology 231, 182-191.Rasochova L, Miller WA (1996). Satellite RNA of barley yellow dwarf-RPV virus reduces accumulation of RPV helper virus RNA and attenuates RPV symptoms in oats. Molecular Plant-Microbe Interactions 9, 646-650.
- BYDV TRANSGENIC RESISTANCE AND POSSIBLE RISKS -
Miller, W.A., Koev, G., and Beckett, R. (2000) Issues surrounding transgenic resistance to the Luteoviridae. In "The Biosafety Results of Field Tests of Genetically Modified Plants and Microorganisms: Proceedings of the Fifth International Symposium, Braunschweig, Germany, 6-10 September 1998." (Schiemann, J. ed.) Biologische Bundesanstalt fur Land- und Forstwirtschaft, Berlin, Germany pp. 203-209.
Koev, G., Mohan, B.R., Dinesh-Kumar, S.P., Torbert, K.A., Somers, D.A. and Miller W.A. (1998) Extreme reduction of disease in oats transformed with the 5-prime half of the barley yellow dwarf virus-PAV genome. Phytopathology 88, 1013-1019.
Miller, W.A., Koev, G., and Mohan, B.R. (1997). Are there risks associated with transgenic resistance to luteoviruses? Plant Disease 81, 700-710. < (Feature Article)
Koev, G., Mohan, B.R., Dinesh-Kumar, S.P., Torbert, K.A., Somers, D.A. and Miller W.A. (1998) Extreme reduction of disease in oats transformed with the 5-prime half of the barley yellow dwarf virus-PAV genome. Phytopathology 88, 1013-1019. Miller, W.A., Koev, G., and Mohan, B.R. (1997). Are there risks associated with transgenic resistance to luteoviruses? Plant Disease 81, 700-710. < (Feature Article)- OTHER -
Soto V, Dorman KS, Miller WA, Farfan-Ale JA, Loroño-Pino MA, Garcia-Rejon JE, Blitvitch BJ (2009) Complete nucleotide sequences of the small and medium RNA genome segments of Kairi virus (family Bunyaviridae). Arch Virol 154, 1555–1558. DOI 10.1007/s00705-009-0465-y
Miller WA, Browning KS, Brown JWS, and Waterhouse PM (2001) The RNA World in Plants: Post-transcriptional control III. (Meeting Review) Plant Cell 13, 1710-1717.
Miller WA, Koev G (1998) Getting a handle on RNA virus recombination. Trends in Microbiology 6, 421-423.
Soto V, Dorman KS, Miller WA, Farfan-Ale JA, Loroño-Pino MA, Garcia-Rejon JE, Blitvitch BJ (2009) Complete nucleotide sequences of the small and medium RNA genome segments of Kairi virus (family Bunyaviridae). Arch Virol 154, 1555–1558. DOI 10.1007/s00705-009-0465-y Miller WA, Browning KS, Brown JWS, and Waterhouse PM (2001) The RNA World in Plants: Post-transcriptional control III. (Meeting Review) Plant Cell 13, 1710-1717. Miller WA, Koev G (1998) Getting a handle on RNA virus recombination. Trends in Microbiology 6, 421-423.