Publications

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Journal Article
Barry JK, Miller WA. A -1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA. Proc Natl Acad Sci USA. 2002/08/01nd ed. 2002;99:11133-8.
Treder K, Kneller EL, Allen EM, Wang Z, Browning KS, Miller WA. The 3' cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation. RNA. 2007/11/21th ed. 2008;14:134-47.
Simon AE, Miller WA. 3' cap-independent translation enhancers of plant viruses. Annu Rev Microbiol. 2013/05/21th ed. 2013;67:21-42.
Shen R, Miller WA. The 3' untranslated region of tobacco necrosis virus RNA contains a barley yellow dwarf virus-like cap-independent translation element. J Virol. 2004/04/14th ed. 2004;78:4655-64.
Koev G, Liu S, Beckett R, Miller WA. The 3'-terminal structure required for replication of Barley yellow dwarf virus RNA contains an embedded 3' end. Virology. 2002/03/07nd ed. 2002;292:114-26.
Miller WA, Silver SL. Alternative tertiary structure attenuates self-cleavage of the ribozyme in the satellite RNA of barley yellow dwarf virus. Nucleic Acids Res. 1991/10/11st ed. 1991;19:5313-20.
Miller WA, Wang Z, Treder K. The amazing diversity of cap-independent translation elements in the 3'-untranslated regions of plant viral RNAs. Biochem Soc Trans. 2007/11/23th ed. 2007;35:1629-33.
Liu S, Vijayendran D, Carrillo-Tripp J, Miller WA, Bonning BC. Analysis of new aphid lethal paralysis virus (ALPV) isolates suggests evolution of two ALPV species. J Gen Virol. 2014/08/30th ed. 2014;95:2809-19.
Chay CA, Gunasinge UB, Dinesh-Kumar SP, Miller WA, Gray SM. Aphid transmission and systemic plant infection determinants of barley yellow dwarf luteovirus-PAV are contained in the coat protein readthrough domain and 17-kDa protein, respectively. Virology. 1996/05/01th ed. 1996;219:57-65.
Pal N, Boyapalle S, Beckett R, Miller WA, Bonning BC. A baculovirus-expressed dicistrovirus that is infectious to aphids. J Virol. 2007/06/29th ed. 2007;81:9339-45.
Pal N, Boyapalle S, Beckett RJ, Miller WA, Bonning BC. A baculovirus-expressed dicistrovirus that is infectious to aphids [CORRECTION]. J Virol. 2014/02/26th ed. 2014;88:3610.
Sivakumar S, Wang Z, Harrison RL, Liu S, Miller WA, Bonning BC. Baculovirus-expressed virus-like particles of Pea enation mosaic virus vary in size and encapsidate baculovirus mRNAs. Virus Res. 2008/11/18th ed. 2009;139:54-63.
Miller WA, Liu S, Beckett R. Barley yellow dwarf virus: Luteoviridae or Tombusviridae?. Mol Plant Pathol. 2002/07/01nd ed. 2002;3:177-83.
Allen E, Wang S, Miller WA. Barley yellow dwarf virus RNA requires a cap-independent translation sequence because it lacks a 5' cap. Virology. 1999/01/27th ed. 1999;253:139-44.
Miller WA, Rasochova L. Barley yellow dwarf viruses. Annu Rev Phytopathol. 1997/01/01th ed. 1997;35:167-90.
Guo L, Allen EM, Miller WA. Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA. Mol Cell. 2001/06/08st ed. 2001;7:1103-9.
Wang Z, Parisien M, Scheets K, Miller WA. The cap-binding translation initiation factor, eIF4E, binds a pseudoknot in a viral cap-independent translation element. Structure. 2011/06/08th ed. 2011;19:868-80.
Kneller EL, Rakotondrafara AM, Miller WA. Cap-independent translation of plant viral RNAs. Virus Res. 2005/12/20th ed. 2006;119:63-75.
Kraft JJ, Treder K, Peterson MS, Miller WA. Cation-dependent folding of 3' cap-independent translation elements facilitates interaction of a 17-nucleotide conserved sequence with eIF4G. Nucleic Acids Res. 2013/01/31th ed. 2013;41:3398-413.
Song SI, Miller WA. Cis and trans requirements for rolling circle replication of a satellite RNA. J Virol. 2004/03/03th ed. 2004;78:3072-82.
Miller WA, Jackson J, Feng Y. Cis- and trans-regulation of luteovirus gene expression by the 3' end of the viral genome. Virus Res. 2015/04/11th ed. 2015;206:37–45.
Krueger EN, Beckett RJ, Gray SM, Miller WA. The complete nucleotide sequence of the genome of Barley yellow dwarf virus-RMV reveals it to be a new Polerovirus distantly related to other yellow dwarf viruses. Front Microbiol. 2013/07/28th ed. 2013;4:205.
Soto V, Dorman KS, Miller WA, Farfan-Ale JA, Lorono-Pino MA, Garcia-Rejon JE, et al.. Complete nucleotide sequences of the small and medium RNA genome segments of Kairi virus (family Bunyaviridae). Arch Virol. 2009/08/04th ed. 2009;154:1555-8.
Jayaram C, Hill JH, Miller WA. Complete nucleotide sequences of two soybean mosaic virus strains differentiated by response of soybean containing the Rsv resistance gene. J Gen Virol. 1992/08/01nd ed. 1992;73 ( Pt 8):2067-77.
Miller WA, Carrillo-Tripp J, Bonning BC, Dolezal AG, Toth AL. Conclusive evidence of replication of a plant virus in honeybees is lacking. MBio. 2014/05/29th ed. 2014;5:e00985-14.
Dinesh-Kumar SP, Miller WA. Control of start codon choice on a plant viral RNA encoding overlapping genes. Plant Cell. 1993/06/01rd ed. 1993;5:679-92.
Kraft JJ, Hoy JA, Miller WA. Crystallization and preliminary X-ray diffraction analysis of the barley yellow dwarf virus cap-independent translation element. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011/05/06th ed. 2011;67:561-4.
Bonning BC, Miller WA. Dicistroviruses. Annu Rev Entomol. 2009/12/08th ed. 2010;55:129-50.
Smirnova E, Firth AE, Miller WA, Scheidecker D, Brault V, Reinbold C, et al.. Discovery of a Small Non-AUG-Initiated ORF in Poleroviruses and Luteoviruses That Is Required for Long-Distance Movement. PLoS Pathog. 2015/05/07th ed. 2015;11:e1004868.
Banerjee AK, Chatterjee M, Yu Y, Suh SG, Miller WA, Hannapel DJ. Dynamics of a mobile RNA of potato involved in a long-distance signaling pathway. Plant Cell. 2006/12/26th ed. 2006;18:3443-57.
Koev G, Mohan BR, Dinesh-Kumar SP, Torbert KA, Somers DA, Miller WA. Extreme Reduction of Disease in Oats Transformed with the 5' Half of the Barley Yellow Dwarf Virus-PAV Genome. Phytopathology. 2008/10/24th ed. 1998;88:1013-9.
Mohan BR, Dinesh-Kumar SP, Miller WA. Genes and cis-acting sequences involved in replication of barley yellow dwarf virus-PAV RNA. Virology. 1995/09/10th ed. 1995;212:186-95.
Gadani F, Mansky LM, Medici R, Miller WA, Hill JH. Genetic engineering of plants for virus resistance. Arch Virol. 1990/01/01th ed. 1990;115:1-21.
Miller WA, Koev G. Getting a handle on RNA virus recombination. Trends Microbiol. 1998/12/10th ed. 1998;6:421-3.
Boyapalle S, Pal N, Miller WA, Bonning BC. A glassy-winged sharpshooter cell line supports replication of Rhopalosiphum padi virus (Dicistroviridae). J Invertebr Pathol. 2006/11/23th ed. 2007;94:130-9.
Rakotondrafara AM, Miller WA. In vitro analysis of translation enhancers. Methods Mol Biol. 2008/03/29th ed. 2008;451:113-24.
Staplin WR, Miller WA. In vivo analyses of viral RNA translation. Methods Mol Biol. 2008/03/29th ed. 2008;451:99-112.
Carrillo-Tripp J, Dolezal AG, Goblirsch MJ, Miller WA, Toth AL, Bonning BC. In vivo and in vitro infection dynamics of honey bee viruses. Scientific Reports. 2016;6:22265.
Boyapalle S, Beckett RJ, Pal N, Miller WA, Bonning BC. Infectious genomic RNA of Rhopalosiphum padi virus transcribed in vitro from a full-length cDNA clone. Virology. 2008/03/15th ed. 2008;375:401-11.
Vijayapalani P, Maeshima M, Nagasaki-Takekuchi N, Miller WA. Interaction of the trans-frame potyvirus protein P3N-PIPO with host protein PCaP1 facilitates potyvirus movement. PLoS Pathog. 2012/04/19th ed. 2012;8:e1002639.
Miras M, Sempere RN, Kraft JJ, Miller WA, Aranda MA, Truniger V. Interfamilial recombination between viruses led to acquisition of a novel translation-enhancing RNA element that allows resistance breaking. New Phytol. 2014/01/01th ed. 2014;202:233-46.
Brown CM, Dinesh-Kumar SP, Miller WA. Local and distant sequences are required for efficient readthrough of the barley yellow dwarf virus PAV coat protein gene stop codon. J Virol . 1996/09/01th ed. 1996;70:5884-92.
Miller WA, White KA. Long-distance RNA-RNA interactions in plant virus gene expression and replication. Annu Rev Phytopathol. 2006/05/18th ed. 2006;44:447-67.
Carrillo-Tripp J, Krueger EN, Harrison RL, Toth AL, Miller WA, Bonning BC. Lymantria dispar iflavirus 1 (LdIV1), a new model to study iflaviral persistence in lepidopterans. J Gen Virol. 2014/07/06th ed. 2014;95:2285-96.
Almasi R, Miller WA, Ziegler-Graff V. Mild and severe cereal yellow dwarf viruses differ in silencing suppressor efficiency of the P0 protein. Virus Research. 2015;208:199-206.
Miller WA, Bujarski JJ, Dreher TW, Hall TC. Minus-strand initiation by brome mosaic virus replicase within the 3' tRNA-like structure of native and modified RNA templates. J Mol Biol. 1986/02/20th ed. 1986;187:537-46.
Jayaram C, Hill JH, Miller WA. Nucleotide sequences of the coat protein genes of two aphid-transmissible strains of soybean mosaic virus. J Gen Virol. 1991/04/01st ed. 1991;72 ( Pt 4):1001-3.
Rakotondrafara AM, Polacek C, Harris E, Miller WA. Oscillating kissing stem-loop interactions mediate 5' scanning-dependent translation by a viral 3'-cap-independent translation element. RNA. 2006/08/22th ed. 2006;12:1893-906.
Chung BY, Miller WA, Atkins JF, Firth AE. An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA. 2008/04/15th ed. 2008;105:5897-902.
Liu S, Sivakumar S, Sparks WO, Miller WA, Bonning BC. A peptide that binds the pea aphid gut impedes entry of Pea enation mosaic virus into the aphid hemocoel. Virology. 2010/03/13th ed. 2010;401:107-16.

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