Publications

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Journal Article
Wang S, Browning KS, Miller WA. A viral sequence in the 3'-untranslated region mimics a 5' cap in facilitating translation of uncapped mRNA. EMBO J. 1997/07/01th ed. 1997;16:4107-16.
Miller WA, Hall TC. Use of micrococcal nuclease in the purification of highly template dependent RNA-dependent RNA polymerase from brome mosaic virus-infected barley. Virology. 1983/02/01rd ed. 1983;125:236-41.
Bujarski JJ, Hardy SF, Miller WA, Hall TC. Use of dodecyl-beta-D-maltoside in the purification and stabilization of RNA polymerase from brome mosaic virus-infected barley. Virology. 1982/06/01nd ed. 1982;119:465-473.
Fan Q, Treder K, Miller WA. Untranslated regions of diverse plant viral RNAs vary greatly in translation enhancement efficiency. BMC Biotechnol. 2012/05/09th ed. 2012;12:22.
Brault V, Miller WA. Translational frameshifting mediated by a viral sequence in plant cells. Proc Natl Acad Sci USA. 1992/03/15nd ed. 1992;89:2262-6.
Di R, Dinesh-Kumar SP, Miller WA. Translational frameshifting by barley yellow dwarf virus RNA (PAV serotype) in Escherichia coli and in eukaryotic cell-free extracts. Mol Plant Microbe Interact. 1993/07/01rd ed. 1993;6:444-52.
Dreher TW, Miller WA. Translational control in positive strand RNA plant viruses. Virology. 2005/12/21th ed. 2006;344:185-97.
Shen R, Rakotondrafara AM, Miller WA. trans regulation of cap-independent translation by a viral subgenomic RNA. J Virol. 2006/09/29th ed. 2006;80:10045-54.
Bonning BC, Pal N, Liu S, Wang Z, Sivakumar S, Dixon PM, et al.. Toxin delivery by the coat protein of an aphid-vectored plant virus provides plant resistance to aphids. Nat Biotechnol. 2013/12/10th ed. 2014;32:102-5.
Miller WA, Koev G. Synthesis of subgenomic RNAs by positive-strand RNA viruses. Virology. 2000/07/13th ed. 2000;273:1-8.
Miller WA, Dreher TW, Hall TC. Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on (-)-sense genomic RNA. Nature. 1985/01/03th ed. 1985;313:68-70.
Saiyasombat R, Carrillo-Tripp J, Miller WA, Bredenbeek PJ, Blitvich BJ. Substitution of the premembrane and envelope protein genes of Modoc virus with the homologous sequences of West Nile virus generates a chimeric virus that replicates in vertebrate but not mosquito cells. Virol J. 2014/08/26th ed. 2014;11:150.
Shen R, Miller WA. Subgenomic RNA as a riboregulator: negative regulation of RNA replication by Barley yellow dwarf virus subgenomic RNA 2. Virology. 2004/09/08th ed. 2004;327:196-205.
Shen R, Miller WA. Structures required for poly(A) tail-independent translation overlap with, but are distinct from, cap-independent translation and RNA replication signals at the 3' end of Tobacco necrosis virus RNA. Virology. 2006/10/07th ed. 2007;358:448-58.
Wang Z, Treder K, Miller WA. Structure of a viral cap-independent translation element that functions via high affinity binding to the eIF4E subunit of eIF4F. J Biol Chem. 2009/03/12th ed. 2009;284:14189-202.
Guo L, Allen E, Miller WA. Structure and function of a cap-independent translation element that functions in either the 3' or the 5' untranslated region. RNA. 2001/01/06st ed. 2000;6:1808-20.
Wang Z, Kraft JJ, Hui AY, Miller WA. Structural plasticity of Barley yellow dwarf virus-like cap-independent translation elements in four genera of plant viral RNAs. Virology. 2010/04/16th ed. 2010;402:177-86.
Xu Y, Ju H-J, DeBlasio S, Carino EJ, Johnson R, MacCoss MJ, et al.. A stem-loop structure in Potato leafroll virus open reading frame 5 (ORF5) is essential for readthrough translation of the coat protein ORF stop codon 700 bases upstream. J. Virol. [Internet]. 2018;92. http://jvi.asm.org/content/92/11/e01544-17.full
Paul CP, Barry JK, Dinesh-Kumar SP, Brault V, Miller WA. A sequence required for -1 ribosomal frameshifting located four kilobases downstream of the frameshift site. J Mol Biol. 2001/08/15st ed. 2001;310:987-99.
Wang S, Miller WA. A sequence located 4.5 to 5 kilobases from the 5' end of the barley yellow dwarf virus (PAV) genome strongly stimulates translation of uncapped mRNA. J Biol Chem. 1995/06/02th ed. 1995;270:13446-52.
Miller WA, Waterhouse PM, Gerlach WL. Sequence and organization of barley yellow dwarf virus genomic RNA. Nucleic Acids Res. 1988/07/11th ed. 1988;16:6097-111.
Miller WA, Waterhouse PM, Kortt AA, Gerlach WL. Sequence and identification of the barley yellow dwarf virus coat protein gene. Virology. 1988/07/01th ed. 1988;165:306-9.
Rasochova L, Passmore BK, Falk BW, Miller WA. The satellite RNA of barley yellow dwarf virus-RPV is supported by beet western yellows virus in dicotyledonous protoplasts and plants. Virology. 1997/05/12th ed. 1997;231:182-91.
Miller WA, Hercus T, Waterhouse PM, Gerlach WL. A satellite RNA of barley yellow dwarf virus contains a novel hammerhead structure in the self-cleavage domain. Virology. 1991/08/01st ed. 1991;183:711-20.
Song SI, Silver SL, Aulik MA, Rasochova L, Mohan BR, Miller WA. Satellite cereal yellow dwarf virus-RPV (satRPV) RNA requires a douXble hammerhead for self-cleavage and an alternative structure for replication. J Mol Biol. 1999/11/02th ed. 1999;293:781-93.
Salem NM, Miller WA, Rowhani A, Golino DA, Moyne AL, Falk BW. Rose spring dwarf-associated virus has RNA structural and gene-expression features like those of Barley yellow dwarf virus. Virology. 2008/03/11th ed. 2008;375:354-60.
Doumayrou J, Sheber M, Bonning BC, W. Miller A. Role of Pea Enation Mosaic Virus Coat Protein in the Host Plant and Aphid Vector. Viruses. 2016;8(11).
Miller WA, Hall TC. RNA-dependent RNA polymerase isolated from cowpea chlorotic mottle virus-infected cowpeas is specific for bromoviral RNA. Virology. 1984/01/15th ed. 1984;132:53-60.
Carino EJ, Scheets K, W. Miller A. The RNA of maize chlorotic mottle virus - an obligatory component of maize lethal necrosis disease - is translated via a variant panicum mosaic virus-like cap-independent translation element. J Virol [Internet]. 2020;94(22):e01005-20. https://doi.org/10.1128/JVI.01005-20
Silver SL, Rasochova L, Dinesh-Kumar SP, Miller WA. Replication of barley yellow dwarf virus satellite RNA transcripts in oat protoplasts. Virology. 1994/01/01th ed. 1994;198:331-5.
Sharma SD, Kraft JJ, Miller WA, Goss DJ. Recruitment of the 40S Ribosome Subunit to the 3'-Untranslated Region (UTR) of a Viral mRNA, via the eIF4 Complex, Facilitates Cap-independent Translation. J Biol Chem. 2015/03/21th ed. 2015;290:11268-81.
Liu S, Sivakumar S, Wang Z, Bonning BC, Miller WA. The readthrough domain of pea enation mosaic virus coat protein is not essential for virus stability in the hemolymph of the pea aphid. Arch Virol. 2009/02/26th ed. 2009;154:469-79.
Beckett R, Miller WA. Rapid full-length cloning of nonpolyadenylated RNA virus genomes. Curr Protoc Microbiol. 2008/09/05th ed. 2007;Chapter 16:Unit 16F 3.
Kanodia P, Prasanth KR, Roa-Linares VC, Bradrick SS, Garcia-Blanco MA, Miller WA. A rapid and simple quantitative method for specific Detection of Smaller Co-terminal RNA by PCR (DeSCo-PCR): Application to the detection of viral subgenomic RNAs. RNA. 2020;26:888-901. PDF icon desco-crpulkitrna20.pdf (3.84 MB)
Doumayrou J, Sheber M, Bonning BC, W. Miller A. Quantification of Pea enation mosaic virus 1 and 2 during infection of Pisum sativum by one step real-time RT-PCR. J Virol Methods. 2017;240:63-68.
Koev G, Mohan BR, Miller WA. Primary and secondary structural elements required for synthesis of barley yellow dwarf virus subgenomic RNA1. J Virol. 1999/03/12th ed. 1999;73:2876-85.
Rakotondrafara AM, Jackson JR, Kneller EP, Miller WA. Preparation and electroporation of oat protoplasts from cell suspension culture. Curr Protoc Microbiol. 2008/09/05th ed. 2007;Chapter 16:Unit 16D 3.
Dinesh-Kumar SP, Brault V, Miller WA. Precise mapping and in vitro translation of a trifunctional subgenomic RNA of barley yellow dwarf virus. Virology. 1992/04/01nd ed. 1992;187:711-22.
Wang S, Guo L, Allen E, Miller WA. A potential mechanism for selective control of cap-independent translation by a viral RNA sequence in cis and in trans. RNA. 1999/06/22th ed. 1999;5:728-38.
Koev G, Miller WA. A positive-strand RNA virus with three very different subgenomic RNA promoters. J Virol. 2000/06/14th ed. 2000;74:5988-96.
Brinton MA, Miller WA. Positive strand RNA virus replication: It depends on the ends. Virus Research. 2015;206:1-2.
Dolezal AG, Carrillo-Tripp J, Miller WA, Bonning BC, Toth AL. Pollen contaminated with field-relevant levels of cyhalothrin affects honey bee survival, nutritional physiology, and pollen consumption behavior. Journal of Economic Entomology. 2016;109:41-48.
Liu S, Sivakumar S, Sparks WO, Miller WA, Bonning BC. A peptide that binds the pea aphid gut impedes entry of Pea enation mosaic virus into the aphid hemocoel. Virology. 2010/03/13th ed. 2010;401:107-16.
Chung BY, Miller WA, Atkins JF, Firth AE. An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA. 2008/04/15th ed. 2008;105:5897-902.
Rakotondrafara AM, Polacek C, Harris E, Miller WA. Oscillating kissing stem-loop interactions mediate 5' scanning-dependent translation by a viral 3'-cap-independent translation element. RNA. 2006/08/22th ed. 2006;12:1893-906.
Jayaram C, Hill JH, Miller WA. Nucleotide sequences of the coat protein genes of two aphid-transmissible strains of soybean mosaic virus. J Gen Virol. 1991/04/01st ed. 1991;72 ( Pt 4):1001-3.
Miller WA, Shen R, Staplin WR, Kanodia P. Noncoding RNAs of plant viruses and viroids: Sponges of host translation and RNA interference machinery. Molecular Plant-Microbe Interactions. 2016;29:156-164.
Miras M, Miller WA, Truniger V, Aranda MA. Non-canonical translation in plant RNA viruses. Front. Plant Sci. 2017;8.
Miller WA, Bujarski JJ, Dreher TW, Hall TC. Minus-strand initiation by brome mosaic virus replicase within the 3' tRNA-like structure of native and modified RNA templates. J Mol Biol. 1986/02/20th ed. 1986;187:537-46.
Almasi R, Miller WA, Ziegler-Graff V. Mild and severe cereal yellow dwarf viruses differ in silencing suppressor efficiency of the P0 protein. Virus Research. 2015;208:199-206.

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